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For the 2025-26 school year, there are 2 public elementary schools serving 225 students in Canistota, SD.

The top ranked public elementary schools in Canistota, SD are Canistota Elementary - 02 and Canistota Middle School - 03. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Canistota, SD public elementary schools have an average math proficiency score of 61% (versus the South Dakota public elementary school average of 43%), and reading proficiency score of 61% (versus the 49% statewide average). Elementary schools in Canistota have an average ranking of 9/10, which is in the top 20% of South Dakota public elementary schools.

Minority enrollment is 12% of the student body (majority American Indian), which is less than the South Dakota public elementary school average of 36% (majority American Indian).