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For the 2025-26 school year, there are 5 public schools serving 3,402 students in Saint Marys, GA (there are , serving 146 private students). 96% of all K-12 students in Saint Marys, GA are educated in public schools (compared to the GA state average of 91%).

The top-ranked public schools in Saint Marys, GA are Mary Lee Clark Elementary School, Sugarmill Elementary School and Saint Marys Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Saint Marys, GA public schools have an average math proficiency score of 58% (versus the Georgia public school average of 39%), and reading proficiency score of 57% (versus the 40% statewide average). Schools in Saint Marys have an average ranking of 10/10, which is in the top 10% of Georgia public schools.

Minority enrollment is 42% of the student body (majority Black), which is less than the Georgia public school average of 65% (majority Black).