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For the 2025-26 school year, there are 3 public schools serving 1,391 students in Bonita, CA (there are , serving 68 private students). 95% of all K-12 students in Bonita, CA are educated in public schools (compared to the CA state average of 90%).

The top-ranked public schools in Bonita, CA are Allen (Ella B.) Elementary School, Sunnyside Elementary School and Valley Vista Elementary School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Bonita, CA public schools have an average math proficiency score of 41% (versus the California public school average of 34%), and reading proficiency score of 50% (versus the 47% statewide average). Schools in Bonita have an average ranking of 7/10, which is in the top 50% of California public schools.

Minority enrollment is 88% of the student body (majority Hispanic), which is more than the California public school average of 80% (majority Hispanic).