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For the 2025-26 school year, there are 3 public schools serving 1,045 students in Hillsborough, NH (there are , serving 90 private students). 92% of all K-12 students in Hillsborough, NH are educated in public schools (compared to the NH state average of 84%).

The top ranked public schools in Hillsborough, NH are Hillsboro-deering Elementary School, Hillsboro-deering High School and Hillsboro-deering Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Hillsborough, NH public schools have an average math proficiency score of 34% (versus the New Hampshire public school average of 42%), and reading proficiency score of 36% (versus the 51% statewide average). Schools in Hillsborough have an average ranking of 2/10, which is in the bottom 50% of New Hampshire public schools.

Minority enrollment is 8% of the student body (majority Hispanic), which is less than the New Hampshire public school average of 18% (majority Hispanic).