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For the 2025-26 school year, there are 4 public schools serving 1,843 students in Bay Saint Louis, MS (there are , serving 904 private students). 67% of all K-12 students in Bay Saint Louis, MS are educated in public schools (compared to the MS state average of 89%).

The top ranked public schools in Bay Saint Louis, MS are Bay High School, North Bay Elementary School and Bay Waveland Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Bay Saint Louis, MS public schools have an average math proficiency score of 61% (versus the Mississippi public school average of 53%), and reading proficiency score of 47% (versus the 42% statewide average). Schools in Bay Saint Louis have an average ranking of 8/10, which is in the top 30% of Mississippi public schools.

Minority enrollment is 36% of the student body (majority Black), which is less than the Mississippi public school average of 58% (majority Black).